IL_9HM0_147

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAC*GG

Length

5 nucleotides

Bulged bases

9HM0|1|r|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_147 not in the Motif Atlas

Geometric match to IL_1I9X_001

Geometric discrepancy: 0.2735

The information below is about IL_1I9X_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9HM0|1|r|U|1419
9HM0|1|r|A|1420
9HM0|1|r|C|1421
*
9HM0|1|r|G|1439
9HM0|1|r|G|1440

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7m

Chain I

Small ribosomal subunit protein uS9m

Chain J

Small ribosomal subunit protein uS10m