IL_9HQV_001
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UGA*UA
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_001 not in the Motif Atlas
- Geometric match to IL_4V9F_082
- Geometric discrepancy: 0.1712
- The information below is about IL_4V9F_082
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.9
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 44
Unit IDs
9HQV|1|SA|U|21
9HQV|1|SA|G|22
9HQV|1|SA|A|23
*
9HQV|1|SF|U|79
9HQV|1|SF|A|80
Current chains
- Chain SA
- SSU-1
- Chain SF
- SSU-6
Nearby chains
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SD
- SSU-4
- Chain SE
- SSU-5
- Chain Ye
- mS121
- Chain Yf
- Macro domain-containing protein
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