IL_9HQV_005
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GUCCCAG*CGGUUAAAC
- Length
- 16 nucleotides
- Bulged bases
- 9HQV|1|SF|U|56, 9HQV|1|SF|A|58, 9HQV|1|SF|A|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_005 not in the Motif Atlas
- Geometric match to IL_8P9A_404
- Geometric discrepancy: 0.2784
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9HQV|1|SF|G|39
9HQV|1|SF|U|40
9HQV|1|SF|C|41
9HQV|1|SF|C|42
9HQV|1|SF|C|43
9HQV|1|SF|A|44
9HQV|1|SF|G|45
*
9HQV|1|SF|C|52
9HQV|1|SF|G|53
9HQV|1|SF|G|54
9HQV|1|SF|U|55
9HQV|1|SF|U|56
9HQV|1|SF|A|57
9HQV|1|SF|A|58
9HQV|1|SF|A|59
9HQV|1|SF|C|60
Current chains
- Chain SF
- SSU-6
Nearby chains
- Chain BD
- mS92
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain SA
- SSU-1
- Chain SM
- SSU-13
- Chain Ye
- mS121
- Chain Yo
- mS131
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