IL_9HQV_007
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GCG*UUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_007 not in the Motif Atlas
- Geometric match to IL_3RW6_004
- Geometric discrepancy: 0.139
- The information below is about IL_3RW6_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
9HQV|1|SF|G|104
9HQV|1|SF|C|105
9HQV|1|SF|G|106
*
9HQV|1|SJ|U|28
9HQV|1|SJ|U|29
9HQV|1|SJ|C|30
Current chains
- Chain SF
- SSU-6
- Chain SJ
- SSU-10
Nearby chains
- Chain Bk
- Putative 30S ribosomal protein S15
- Chain Yg
- Thioredoxin domain-containing protein
- Chain Yu
- mS137
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