IL_9HQV_009
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CUA*UUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_009 not in the Motif Atlas
- Geometric match to IL_4JGN_002
- Geometric discrepancy: 0.1682
- The information below is about IL_4JGN_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
9HQV|1|SG|C|5
9HQV|1|SG|U|6
9HQV|1|SG|A|7
*
9HQV|1|SJ|U|11
9HQV|1|SJ|U|12
9HQV|1|SJ|G|13
Current chains
- Chain SG
- SSU-7
- Chain SJ
- SSU-10
Nearby chains
- Chain Bc
- Putative mitochondrial ribosomal protein s6-2
- Chain Bk
- Putative 30S ribosomal protein S15
- Chain Bn
- Putative ribosomal protein S18
- Chain Bq
- Mitochondrial ribosomal protein, mS26
- Chain Yg
- Thioredoxin domain-containing protein
- Chain Yj
- DnaJ domain-containing protein
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