IL_9HQV_012
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UUC*GUUA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_012 not in the Motif Atlas
- Geometric match to IL_6ZDU_001
- Geometric discrepancy: 0.2691
- The information below is about IL_6ZDU_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
9HQV|1|SG|U|23
9HQV|1|SG|U|24
9HQV|1|SG|C|25
*
9HQV|1|SI|G|28
9HQV|1|SI|U|29
9HQV|1|SI|U|30
9HQV|1|SI|A|31
Current chains
- Chain SG
- SSU-7
- Chain SI
- SSU-9
Nearby chains
- Chain Bc
- Putative mitochondrial ribosomal protein s6-2
- Chain Bg
- Putative ribosomal protein S11
- Chain SH
- SSU-8
- Chain SJ
- SSU-10
- Chain Ul
- GLY-ARG-SER-LYS-VAL-LEU-ILE-ARG-ARG-LEU-LYS-GLU-ARG-ALA-LYS-LYS-GLU-ALA-GLU-LYS-LYS-ALA
- Chain Yb
- ATP-dependent Clp protease proteolytic subunit,related protein
Coloring options: