IL_9HQV_020
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- AUA*UUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_020 not in the Motif Atlas
- Geometric match to IL_4E48_006
- Geometric discrepancy: 0.1381
- The information below is about IL_4E48_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
9HQV|1|SK|A|116
9HQV|1|SK|U|117
9HQV|1|SK|A|118
*
9HQV|1|SM|U|31
9HQV|1|SM|U|32
9HQV|1|SM|U|33
Current chains
- Chain SK
- SSU-11
- Chain SM
- SSU-13
Nearby chains
- Chain Bj
- Putative ribosomal protein S14
- Chain Bs
- DNA double-strand break repair rad50 ATPase
- Chain Bu
- Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein
- Chain UC
- Chain UC
- Chain Yo
- mS131
- Chain Ys
- mS135
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