IL_9HQV_026
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CAGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 9HQV|1|SN|A|5
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_026 not in the Motif Atlas
- Geometric match to IL_4LFB_004
- Geometric discrepancy: 0.3364
- The information below is about IL_4LFB_004
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
9HQV|1|SN|C|4
9HQV|1|SN|A|5
9HQV|1|SN|G|6
9HQV|1|SN|G|7
*
9HQV|1|SP|C|9
9HQV|1|SP|G|10
Current chains
- Chain SN
- SSU-14
- Chain SP
- SSU-16
Nearby chains
- Chain BB
- mS75
- Chain Bi
- us13m
- Chain Br
- Small ribosomal subunit protein mS29
- Chain SK
- SSU-11
- Chain SM
- SSU-13
- Chain SQ
- SSU-17
- Chain Yn
- AP2 domain transcription factor AP2IX-6
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