IL_9HQV_035
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GAU*AGU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_035 not in the Motif Atlas
- Geometric match to IL_7QUA_003
- Geometric discrepancy: 0.2057
- The information below is about IL_7QUA_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9HQV|1|SU|G|27
9HQV|1|SU|A|28
9HQV|1|SU|U|29
*
9HQV|1|SU|A|38
9HQV|1|SU|G|39
9HQV|1|SU|U|40
Current chains
- Chain SU
- SSU-21
Nearby chains
- Chain Bg
- Putative ribosomal protein S11
- Chain Bo
- Ribosomal protein, bS21m
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SJ
- SSU-10
- Chain Yg
- Thioredoxin domain-containing protein
- Chain Yu
- mS137
Coloring options: