IL_9HUQ_038

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9HUQ|1|b|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HUQ_038 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.2341

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9HUQ|1|b|U|1018
9HUQ|1|b|U|1019
9HUQ|1|b|A|1020
9HUQ|1|b|A|1021
9HUQ|1|b|G|1022
9HUQ|1|b|U|1023
9HUQ|1|b|G|1024
*
9HUQ|1|b|C|1140
9HUQ|1|b|U|1141
9HUQ|1|b|A|1142
9HUQ|1|b|A|1143
9HUQ|1|b|A|1144

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36A

Chain j

Large ribosomal subunit protein uL13