IL_9HUQ_066

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9HUQ|1|b|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HUQ_066 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.1428

The information below is about IL_8B0X_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9HUQ|1|b|U|1712
9HUQ|1|b|A|1713
9HUQ|1|b|U|1714
9HUQ|1|b|G|1715
9HUQ|1|b|U|1716
9HUQ|1|b|A|1717
9HUQ|1|b|G|1718
*
9HUQ|1|b|U|1742
9HUQ|1|b|G|1743
9HUQ|1|b|A|1744
9HUQ|1|b|A|1745
9HUQ|1|b|A|1746

Current chains

Chain b

23S rRNA

Nearby chains