IL_9HUQ_070

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9HUQ|1|b|A|1801, 9HUQ|1|b|C|1816, 9HUQ|1|b|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HUQ_070 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1402

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9HUQ|1|b|U|1798
9HUQ|1|b|G|1799
9HUQ|1|b|C|1800
9HUQ|1|b|A|1801
9HUQ|1|b|A|1802
9HUQ|1|b|A|1803
9HUQ|1|b|C|1804
*
9HUQ|1|b|G|1813
9HUQ|1|b|G|1814
9HUQ|1|b|A|1815
9HUQ|1|b|C|1816
9HUQ|1|b|G|1817
9HUQ|1|b|U|1818
9HUQ|1|b|A|1819
9HUQ|1|b|U|1820
9HUQ|1|b|A|1821

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2