IL_9HUQ_091

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HUQ_091 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1939

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9HUQ|1|b|C|2466
9HUQ|1|b|C|2467
9HUQ|1|b|A|2468
9HUQ|1|b|A|2469
9HUQ|1|b|G|2470
*
9HUQ|1|b|C|2480
9HUQ|1|b|G|2481
9HUQ|1|b|A|2482
9HUQ|1|b|C|2483
9HUQ|1|b|G|2484

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36A

Chain m

50S ribosomal protein L16