IL_9HUS_011

3D structure

PDB id

9HUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HUS_011 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0972

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9HUS|1|b|C|239
9HUS|1|b|C|240
9HUS|1|b|A|241
9HUS|1|b|G|242
9HUS|1|b|U|243
9HUS|1|b|A|244
9HUS|1|b|G|245
*
9HUS|1|b|C|253
9HUS|1|b|G|254
9HUS|1|b|A|255
9HUS|1|b|A|256
9HUS|1|b|C|257
9HUS|1|b|G|258

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain l

Large ribosomal subunit protein uL15