9HUS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9HUS_001 | 1/a/34:48 | No text annotation | geometric HL_8B0X_102 HL_97756.3 | |
| HL_9HUS_002 | 1/a/38:44 | No text annotation | homologous HL_4V9F_071 HL_59381.2 | |
| HL_9HUS_003 | 1/a/86:90 | No text annotation | ||
| HL_9HUS_004 | 1/b/59:68 | No text annotation | ||
| HL_9HUS_005 | 1/b/87:95 | No text annotation | geometric HL_8B0X_034 HL_65821.1 | |
| HL_9HUS_006 | 1/b/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.3 | |
| HL_9HUS_008 | 1/b/158:168 | No text annotation | geometric HL_8B0X_037 HL_50765.2 | |
| HL_9HUS_009 | 1/b/194:201 | No text annotation | homologous HL_7A0S_006 HL_48677.1 | |
| HL_9HUS_010 | 1/b/225:230 | No text annotation | geometric HL_8B0X_039 HL_63151.1 | |
| HL_9HUS_011 | 1/b/246:252 | No text annotation | homologous HL_7A0S_008 HL_76371.2 | |
| HL_9HUS_012 | 1/b/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.3 | |
| HL_9HUS_013 | 1/b/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.7 | |
| HL_9HUS_014 | 1/b/327:335 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.4 | |
| HL_9HUS_015 | 1/b/382:392 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_9HUS_016 | 1/b/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_9HUS_017 | 1/b/462:467 | GNRA | homologous HL_7A0S_015 HL_34789.4 | |
| HL_9HUS_018 | 1/b/487:493 | GNRA | homologous HL_7A0S_016 HL_34789.4 | |
| HL_9HUS_020 | 1/b/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.3 | |
| HL_9HUS_021 | 1/b/611:617 | No text annotation | geometric HL_9E6Q_019 HL_42293.1 | |
| HL_9HUS_022 | 1/b/629:634 | GNRA | homologous HL_7A0S_020 HL_34789.4 | |
| HL_9HUS_023 | 1/b/641:647 | GNRA | geometric HL_9DFE_019 HL_34789.4 | |
| HL_9HUS_024 | 1/b/712:719 | No text annotation | geometric HL_8B0X_052 HL_98423.3 | |
| HL_9HUS_025 | 1/b/744:753 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_9HUS_026 | 1/b/779:785 | UNCG variation | geometric HL_2NUE_001 HL_51020.2 | |
| HL_9HUS_027 | 1/b/826:831 | No text annotation | homologous HL_7A0S_024 HL_27530.1 | |
| HL_9HUS_029 | 1/b/955:962 | GNRA | homologous HL_7A0S_026 HL_34789.4 | |
| HL_9HUS_030 | 1/b/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_9HUS_033 | 1/b/1170:1179 | No text annotation | ||
| HL_9HUS_034 | 1/b/1222:1227 | GNRA | homologous HL_7A0S_031 HL_34789.4 | |
| HL_9HUS_035 | 1/b/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.3 | |
| HL_9HUS_036 | 1/b/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_9HUS_037 | 1/b/1363:1368 | GNRA variation | homologous HL_7A0S_034 HL_34789.4 | |
| HL_9HUS_038 | 1/b/1389:1398 | No text annotation | homologous HL_7A0S_035 HL_77449.1 | |
| HL_9HUS_040 | 1/b/1492:1498 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_9HUS_042 | 1/b/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_9HUS_043 | 1/b/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_28592.2 | |
| HL_9HUS_044 | 1/b/1630:1636 | No text annotation | geometric HL_8B0X_069 HL_34789.4 | |
| HL_9HUS_045 | 1/b/1691:1696 | UNCG | homologous HL_7A0S_042 HL_61337.3 | |
| HL_9HUS_047 | 1/b/1752:1756 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_9HUS_048 | 1/b/1777:1787 | No text annotation | geometric HL_8B0X_073 HL_87681.1 | |
| HL_9HUS_049 | 1/b/1806:1811 | GNRA | homologous HL_7A0S_046 HL_93535.2 | |
| HL_9HUS_051 | 1/b/1910:1920 | No text annotation | geometric HL_9DFE_046 HL_82185.1 | |
| HL_9HUS_052 | 1/b/1950:1956 | No text annotation | ||
| HL_9HUS_053 | 1/b/2027:2036 | No text annotation | homologous HL_7A0S_049 HL_78372.1 | |
| HL_9HUS_055 | 1/b/2209:2215 | No text annotation | geometric HL_8B0X_079 HL_42293.1 | |
| HL_9HUS_056 | 1/b/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_9HUS_057 | 1/b/2264:2276 | No text annotation | homologous HL_7A0S_053 HL_02042.1 | |
| HL_9HUS_058 | 1/b/2303:2313 | No text annotation | ||
| HL_9HUS_059 | 1/b/2324:2331 | Pseudoknot geometry | homologous HL_7A0S_055 HL_52651.2 | |
| HL_9HUS_060 | 1/b/2356:2361 | No text annotation | geometric HL_8B0X_084 HL_34789.4 | |
| HL_9HUS_061 | 1/b/2374:2379 | GNRA | homologous HL_7A0S_057 HL_34789.4 | |
| HL_9HUS_062 | 1/b/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_9HUS_063 | 1/b/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_9HUS_064 | 1/b/2528:2535 | GNRA variation | homologous HL_7A0S_060 HL_46665.2 | |
| HL_9HUS_065 | 1/b/2551:2557 | No text annotation | homologous HL_7A0S_061 HL_48677.1 | |
| HL_9HUS_066 | 1/b/2594:2599 | GNRA | homologous HL_7A0S_062 HL_34789.4 | |
| HL_9HUS_067 | 1/b/2658:2663 | GNRA | homologous HL_7A0S_063 HL_34789.4 | |
| HL_9HUS_069 | 1/b/2745:2759 | No text annotation | homologous HL_7A0S_065 HL_53269.2 | |
| HL_9HUS_071 | 1/b/2819:2827 | No text annotation | homologous HL_7A0S_067 HL_37889.1 | |
| HL_9HUS_072 | 1/b/2856:2861 | GNRA | homologous HL_7A0S_068 HL_34789.4 | |
| HL_9HUS_073 | 1/v/13:23 | No text annotation | homologous HL_7YSE_001 NA | |
| HL_9HUS_074 | 1/v/31:41 | No text annotation | homologous HL_4V7M_039 HL_14063.2 | |
| HL_9HUS_075 | 1/v/54:62 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_33597.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9HUS_007 | UNCG | ||
| HL_9HUS_019 | No text annotation | ||
| HL_9HUS_028 | No text annotation | ||
| HL_9HUS_031 | No text annotation | ||
| HL_9HUS_032 | No text annotation | ||
| HL_9HUS_039 | No text annotation | ||
| HL_9HUS_041 | No text annotation | ||
| HL_9HUS_046 | Mini UNCG | ||
| HL_9HUS_050 | No text annotation | ||
| HL_9HUS_054 | No text annotation | ||
| HL_9HUS_068 | Ribsomal LSU H95 | ||
| HL_9HUS_070 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9HUS_001 | 1/a/17:18, 1/a/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.2 | |
| IL_9HUS_002 | 1/a/23:28, 1/a/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.5 | |
| IL_9HUS_003 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.2 | |
| IL_9HUS_004 | 1/a/34:38, 1/a/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_9HUS_005 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 | |
| IL_9HUS_006 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.1 | |
| IL_9HUS_007 | 1/b/36:37, 1/b/442:444 | Single bulged A | homologous IL_7A0S_002 IL_14190.2 | |
| IL_9HUS_008 | 1/b/43:44, 1/b/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_34520.3 | |
| IL_9HUS_010 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.3 | |
| IL_9HUS_011 | 1/b/239:245, 1/b/253:258 | No text annotation | geometric IL_8B0X_071 IL_02666.1 | |
| IL_9HUS_012 | 1/b/269:271, 1/b/366:370 | No text annotation | ||
| IL_9HUS_014 | 1/b/293:295, 1/b/343:347 | No text annotation | geometric IL_4WF9_014 IL_76658.1 | |
| IL_9HUS_015 | 1/b/536:539, 1/b/554:557 | No text annotation | geometric IL_8B0X_076 IL_58355.2 | |
| IL_9HUS_016 | 1/b/564:566, 1/b/575:577 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.3 | |
| IL_9HUS_017 | 1/b/606:610, 1/b/618:622 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_9HUS_018 | 1/b/672:674, 1/b/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.4 | |
| IL_9HUS_019 | 1/b/674:678, 1/b/799:806 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.1 | |
| IL_9HUS_020 | 1/b/697:698, 1/b/763:765 | Single bulged A | homologous IL_7A0S_016 IL_14190.2 | |
| IL_9HUS_021 | 1/b/702:703, 1/b/728:730 | Single bulged G | homologous IL_7A0S_017 IL_28408.2 | |
| IL_9HUS_022 | 1/b/703:707, 1/b/724:728 | No text annotation | geometric IL_8B0X_083 IL_15190.2 | |
| IL_9HUS_023 | 1/b/738:740, 1/b/757:758 | No text annotation | geometric IL_8B0X_084 IL_48076.8 | |
| IL_9HUS_024 | 1/b/775:777, 1/b/787:791 | No text annotation | geometric IL_9E6Q_032 IL_89509.1 | |
| IL_9HUS_025 | 1/b/844:848, 1/b/930:934 | No text annotation | ||
| IL_9HUS_026 | 1/b/849:850, 1/b/927:929 | No text annotation | geometric IL_8OI5_012 IL_15011.3 | |
| IL_9HUS_027 | 1/b/856:862, 1/b/915:921 | No text annotation | geometric IL_8B0X_090 IL_94128.1 | |
| IL_9HUS_028 | 1/b/862:863, 1/b/913:915 | Minor groove platform | homologous IL_7A0S_028 IL_34520.3 | |
| IL_9HUS_029 | 1/b/864:868, 1/b/909:912 | C-loop | homologous IL_7A0S_029 IL_16301.1 | |
| IL_9HUS_030 | 1/b/870:872, 1/b/905:907 | Isolated near basepair | homologous IL_7A0S_030 IL_42997.5 | |
| IL_9HUS_031 | 1/b/875:879, 1/b/898:902 | No text annotation | ||
| IL_9HUS_033 | 1/b/994:996, 1/b/1159:1160 | Single bulged C | homologous IL_7A0S_032 IL_05642.3 | |
| IL_9HUS_034 | 1/b/998:1002, 1/b/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_9HUS_035 | 1/b/1004:1011, 1/b/1150:1151 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_11411.1 | |
| IL_9HUS_036 | 1/b/1011:1013, 1/b/1149:1150 | Single bulged U | homologous IL_7A0S_035 IL_97561.4 | |
| IL_9HUS_037 | 1/b/1018:1024, 1/b/1140:1144 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_9HUS_038 | 1/b/1024:1030, 1/b/1124:1140 | No text annotation | geometric IL_8B0X_101 IL_50715.4 | |
| IL_9HUS_039 | 1/b/1031:1034, 1/b/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_76400.1 | |
| IL_9HUS_040 | 1/b/1038:1041, 1/b/1114:1117 | No text annotation | geometric IL_8B0X_103 IL_15225.2 | |
| IL_9HUS_041 | 1/b/1196:1198, 1/b/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.5 | |
| IL_9HUS_042 | 1/b/1202:1206, 1/b/1240:1243 | No text annotation | ||
| IL_9HUS_043 | 1/b/1208:1215, 1/b/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_9HUS_044 | 1/b/1262:1269, 1/b/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.3 | |
| IL_9HUS_045 | 1/b/1310:1313, 1/b/1603:1604 | No text annotation | geometric IL_9E6Q_008 IL_74641.2 | |
| IL_9HUS_046 | 1/b/1319:1323, 1/b/1331:1333 | C-loop | homologous IL_7A0S_047 IL_06671.1 | |
| IL_9HUS_047 | 1/b/1351:1355, 1/b/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_9HUS_048 | 1/b/1357:1361, 1/b/1370:1374 | tSH-tHW-tHS | homologous IL_7A0S_049 IL_05821.1 | |
| IL_9HUS_049 | 1/b/1415:1416, 1/b/1582:1587 | No text annotation | ||
| IL_9HUS_054 | 1/b/1468:1471, 1/b/1520:1524 | No text annotation | geometric IL_8B0X_118 IL_68574.5 | |
| IL_9HUS_057 | 1/b/1489:1491, 1/b/1499:1500 | No text annotation | geometric IL_8B0X_121 IL_14190.2 | |
| IL_9HUS_058 | 1/b/1526:1529, 1/b/1542:1546 | No text annotation | geometric IL_9E6Q_021 IL_45790.2 | |
| IL_9HUS_059 | 1/b/1651:1656, 1/b/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_9HUS_060 | 1/b/1663:1665, 1/b/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.1 | |
| IL_9HUS_061 | 1/b/1666:1669, 1/b/1993:1994 | No text annotation | geometric IL_8B0X_125 IL_74641.2 | |
| IL_9HUS_062 | 1/b/1666:1674, 1/b/1990:1994 | No text annotation | geometric IL_4WF9_117 IL_80252.1 | |
| IL_9HUS_063 | 1/b/1669:1674, 1/b/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.1 | |
| IL_9HUS_064 | 1/b/1686:1691, 1/b/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.1 | |
| IL_9HUS_065 | 1/b/1712:1718, 1/b/1742:1746 | No text annotation | geometric IL_8B0X_128 IL_82100.1 | |
| IL_9HUS_066 | 1/b/1720:1724, 1/b/1736:1740 | No text annotation | geometric IL_8B0X_129 IL_70744.1 | |
| IL_9HUS_068 | 1/b/1770:1771, 1/b/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_14190.2 | |
| IL_9HUS_069 | 1/b/1798:1804, 1/b/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_9HUS_070 | 1/b/1837:1840, 1/b/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.1 | |
| IL_9HUS_071 | 1/b/1841:1842, 1/b/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.1 | |
| IL_9HUS_072 | 1/b/1846:1849, 1/b/1893:1894 | No text annotation | geometric IL_8GLP_070 IL_73108.2 | |
| IL_9HUS_073 | 1/b/1851:1860, 1/b/1882:1891 | No text annotation | ||
| IL_9HUS_074 | 1/b/1864:1867, 1/b/1874:1878 | No text annotation | geometric IL_8B0X_136 IL_77691.7 | |
| IL_9HUS_075 | 1/b/1933:1934, 1/b/1964:1967 | No text annotation | geometric IL_8B0X_137 IL_24886.2 | |
| IL_9HUS_076 | 1/b/1934:1945, 1/b/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9HUS_077 | 1/b/2050:2052, 1/b/2617:2618 | Major groove platform | homologous IL_7A0S_073 IL_48076.8 | |
| IL_9HUS_078 | 1/b/2054:2056, 1/b/2612:2615 | No text annotation | geometric IL_8B0X_140 IL_80025.1 | |
| IL_9HUS_079 | 1/b/2067:2069, 1/b/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.4 | |
| IL_9HUS_080 | 1/b/2070:2071, 1/b/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_34520.3 | |
| IL_9HUS_081 | 1/b/2081:2083, 1/b/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.2 | |
| IL_9HUS_082 | 1/b/2085:2087, 1/b/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.3 | |
| IL_9HUS_083 | 1/b/2202:2204, 1/b/2220:2221 | No text annotation | geometric IL_8B0X_146 IL_97561.4 | |
| IL_9HUS_084 | 1/b/2297:2299, 1/b/2317:2321 | No text annotation | geometric IL_8B0X_147 IL_14250.1 | |
| IL_9HUS_085 | 1/b/2350:2353, 1/b/2364:2367 | Double sheared | homologous IL_7A0S_081 IL_58355.2 | |
| IL_9HUS_086 | 1/b/2401:2403, 1/b/2414:2415 | No text annotation | ||
| IL_9HUS_087 | 1/b/2454:2455, 1/b/2496:2498 | Major groove platform | homologous IL_7A0S_084 IL_48076.8 | |
| IL_9HUS_088 | 1/b/2457:2459, 1/b/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_9HUS_089 | 1/b/2459:2461, 1/b/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.2 | |
| IL_9HUS_090 | 1/b/2466:2470, 1/b/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.2 | |
| IL_9HUS_091 | 1/b/2507:2508, 1/b/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.2 | |
| IL_9HUS_092 | 1/b/2510:2512, 1/b/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.4 | |
| IL_9HUS_093 | 1/b/2512:2513, 1/b/2571:2574 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.2 | |
| IL_9HUS_094 | 1/b/2522:2523, 1/b/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
| IL_9HUS_095 | 1/b/2591:2592, 1/b/2601:2603 | No text annotation | geometric IL_8B0X_159 IL_14190.2 | |
| IL_9HUS_096 | 1/b/2636:2640, 1/b/2774:2782 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_9HUS_097 | 1/b/2652:2658, 1/b/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_9HUS_098 | 1/b/2680:2684, 1/b/2725:2727 | C-loop | homologous IL_7A0S_095 IL_63596.12 | |
| IL_9HUS_099 | 1/b/2687:2691, 1/b/2718:2722 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_9HUS_100 | 1/b/2695:2696, 1/b/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.2 | |
| IL_9HUS_101 | 1/b/2737:2742, 1/b/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_9HUS_103 | 1/b/2838:2839, 1/b/2878:2880 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.2 | |
| IL_9HUS_104 | 1/b/2843:2846, 1/b/2870:2874 | No text annotation | geometric IL_8B0X_169 IL_60988.2 | |
| IL_9HUS_105 | 1/b/2847:2852, 1/b/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_48489.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9HUS_009 | Kink-turn | ||
| IL_9HUS_013 | No text annotation | ||
| IL_9HUS_032 | No text annotation | ||
| IL_9HUS_050 | UAA/GAN | ||
| IL_9HUS_051 | No text annotation | ||
| IL_9HUS_052 | tSH-tHW | ||
| IL_9HUS_053 | No text annotation | ||
| IL_9HUS_055 | No text annotation | ||
| IL_9HUS_056 | No text annotation | ||
| IL_9HUS_067 | No text annotation | ||
| IL_9HUS_102 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9HUS_001 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation | ||
| J3_9HUS_002 | 1/b/30:31, 1/b/474:484, 1/b/496:510 | No text annotation | homologous J3_7A0S_015 J3_17917.1 | |
| J3_9HUS_003 | 1/b/32:35, 1/b/445:461, 1/b/468:473 | No text annotation | geometric J3_9DFE_003 J3_07616.1 | |
| J3_9HUS_004 | 1/b/56:57, 1/b/70:76, 1/b/110:114 | No text annotation | homologous J3_7A0S_002 J3_01004.1 | |
| J3_9HUS_005 | 1/b/683:689, 1/b/773:775, 1/b/791:794 | No text annotation | homologous J3_7A0S_004 J3_46658.1 | |
| J3_9HUS_006 | 1/b/698:700, 1/b/732:736, 1/b/760:763 | No text annotation | homologous J3_7A0S_005 J3_69816.1 | |
| J3_9HUS_007 | 1/b/1043:1059, 1/b/1079:1090, 1/b/1101:1112 | No text annotation | ||
| J3_9HUS_008 | 1/b/1298:1303, 1/b/1625:1627, 1/b/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_9HUS_009 | 1/b/1306:1309, 1/b/1605:1611, 1/b/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_9HUS_010 | 1/b/1344:1350, 1/b/1381:1385, 1/b/1402:1403 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_9HUS_011 | 1/b/1424:1429, 1/b/1564:1565, 1/b/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_9HUS_012 | 1/b/2091:2093, 1/b/2196:2200, 1/b/2223:2228 | No text annotation | homologous J3_7A0S_009 J3_17460.1 | |
| J3_9HUS_013 | 1/b/2282:2284, 1/b/2384:2395, 1/b/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_04772.1 | |
| J3_9HUS_014 | 1/b/2295:2297, 1/b/2321:2323, 1/b/2332:2337 | No text annotation | geometric J3_8B0X_022 J3_05327.1 | |
| J3_9HUS_015 | 1/b/2295:2299, 1/b/2317:2323, 1/b/2332:2337 | No text annotation | ||
| J3_9HUS_016 | 1/b/2517:2520, 1/b/2545:2550, 1/b/2558:2567 | No text annotation | ||
| J3_9HUS_017 | 1/b/2789:2791, 1/b/2805:2806, 1/b/2892:2894 | No text annotation | ||
| J3_9HUS_018 | 1/b/2812:2815, 1/b/2831:2836, 1/b/2882:2888 | No text annotation | ||
| J4_9HUS_001 | 1/b/268:269, 1/b/370:375, 1/b/399:406, 1/b/421:424 | No text annotation | homologous J4_7A0S_001 J4_94698.1 | |
| J4_9HUS_002 | 1/b/297:301, 1/b/316:319, 1/b/323:325, 1/b/337:341 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_9HUS_003 | 1/b/601:604, 1/b/624:628, 1/b/635:638, 1/b/650:656 | No text annotation | ||
| J4_9HUS_004 | 1/b/1270:1276, 1/b/1294:1295, 1/b/1645:1648, 1/b/2009:2010 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_9HUS_005 | 1/b/1310:1314, 1/b/1338:1343, 1/b/1404:1405, 1/b/1597:1604 | No text annotation | ||
| J4_9HUS_006 | 1/b/1313:1314, 1/b/1338:1343, 1/b/1404:1405, 1/b/1597:1603 | No text annotation | homologous J4_7A0S_006 J4_48150.1 | |
| J4_9HUS_008 | 1/b/1772:1776, 1/b/1788:1792, 1/b/1827:1830, 1/b/1975:1979 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_9HUS_009 | 1/b/1833:1835, 1/b/1905:1906, 1/b/1924:1933, 1/b/1967:1972 | No text annotation | ||
| J4_9HUS_010 | 1/b/2285:2289, 1/b/2343:2347, 1/b/2370:2372, 1/b/2381:2383 | No text annotation | homologous J4_7A0S_009 J4_98139.1 | |
| J4_9HUS_011 | 1/b/2643:2646, 1/b/2674:2676, 1/b/2731:2735, 1/b/2769:2771 | No text annotation | ||
| J4_9HUS_012 | 1/v/7:10, 1/v/26:28, 1/v/44:50, 1/v/66:67 | tRNA junction | homologous J4_1H4S_001 J4_95067.1 | |
| J5_9HUS_001 | 1/b/47:54, 1/b/116:121, 1/b/130:131, 1/b/148:150, 1/b/176:178 | No text annotation | ||
| J5_9HUS_002 | 1/b/531:533, 1/b/560:564, 1/b/577:579, 1/b/1261:1262, 1/b/2017:2018 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9HUS_003 | 1/b/584:589, 1/b/668:671, 1/b/809:812, 1/b/1195:1196, 1/b/1250:1256 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_9HUS_004 | 1/b/1674:1682, 1/b/1706:1707, 1/b/1751:1752, 1/b/1756:1764, 1/b/1988:1990 | No text annotation | homologous J5_7A0S_005 J5_99177.1 | |
| J5_9HUS_005 | 1/b/2057:2064, 1/b/2446:2454, 1/b/2498:2507, 1/b/2582:2588, 1/b/2606:2611 | No text annotation | ||
| J5_9HUS_006 | 1/b/2074:2077, 1/b/2243:2246, 1/b/2258:2259, 1/b/2281:2282, 1/b/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_9HUS_001 | 1/b/45:46, 1/b/179:184, 1/b/212:224, 1/b/231:235, 1/b/262:266, 1/b/426:433 | No text annotation | ||
| J6_9HUS_002 | 1/b/2074:2077, 1/b/2243:2246, 1/b/2258:2259, 1/b/2281:2284, 1/b/2384:2395, 1/b/2421:2435 | No text annotation | ||
| J7_9HUS_001 | 1/b/8:15, 1/b/525:531, 1/b/2018:2023, 1/b/2040:2043, 1/b/2625:2630, 1/b/2788:2789, 1/b/2894:2895 | No text annotation | ||
| J7_9HUS_002 | 1/b/817:822, 1/b/835:838, 1/b/940:946, 1/b/971:976, 1/b/987:991, 1/b/1163:1164, 1/b/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_9HUS_007 | No text annotation |
Coloring options: