IL_9HY6_015
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 9HY6|1|b|A|504, 9HY6|1|b|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HY6_015 not in the Motif Atlas
- Geometric match to IL_8B0X_075
- Geometric discrepancy: 0.1118
- The information below is about IL_8B0X_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
9HY6|1|b|G|481
9HY6|1|b|A|482
9HY6|1|b|A|483
9HY6|1|b|C|484
*
9HY6|1|b|G|496
9HY6|1|b|A|497
9HY6|1|b|G|498
9HY6|1|b|U|499
9HY6|1|b|G|500
9HY6|1|b|A|501
9HY6|1|b|A|502
9HY6|1|b|A|503
9HY6|1|b|A|504
9HY6|1|b|A|505
9HY6|1|b|G|506
9HY6|1|b|A|507
9HY6|1|b|A|508
9HY6|1|b|C|509
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain s
- Large ribosomal subunit protein uL22
- Chain u
- Large ribosomal subunit protein uL24
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