IL_9HY6_020
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9HY6|1|b|G|801, 9HY6|1|b|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HY6_020 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1387
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9HY6|1|b|G|674
9HY6|1|b|A|675
9HY6|1|b|A|676
9HY6|1|b|A|677
9HY6|1|b|C|678
*
9HY6|1|b|G|799
9HY6|1|b|A|800
9HY6|1|b|G|801
9HY6|1|b|A|802
9HY6|1|b|U|803
9HY6|1|b|A|804
9HY6|1|b|G|805
9HY6|1|b|C|806
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain l
- Large ribosomal subunit protein uL15
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