IL_9HY6_039
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9HY6|1|b|A|1127, 9HY6|1|b|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HY6_039 not in the Motif Atlas
- Geometric match to IL_8B0X_101
- Geometric discrepancy: 0.0847
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9HY6|1|b|G|1024
9HY6|1|b|G|1025
9HY6|1|b|G|1026
9HY6|1|b|A|1027
9HY6|1|b|A|1028
9HY6|1|b|A|1029
9HY6|1|b|C|1030
*
9HY6|1|b|G|1124
9HY6|1|b|G|1125
9HY6|1|b|A|1126
9HY6|1|b|A|1127
9HY6|1|b|G|1128
9HY6|1|b|A|1129
9HY6|1|b|U|1130
9HY6|1|b|G|1131
9HY6|1|b|U|1132
9HY6|1|b|A|1133
9HY6|1|b|A|1134
9HY6|1|b|C|1135
9HY6|1|b|G|1136
9HY6|1|b|G|1137
9HY6|1|b|G|1138
9HY6|1|b|G|1139
9HY6|1|b|C|1140
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L3
- Chain j
- Large ribosomal subunit protein uL13
- Chain m
- 50S ribosomal protein L16
Coloring options: