IL_9HY6_067

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HY6_067 not in the Motif Atlas

Geometric match to IL_8B0X_129

Geometric discrepancy: 0.1777

The information below is about IL_8B0X_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70744.1

Basepair signature

cWW-tSH-tHS-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9HY6|1|b|U|1720
9HY6|1|b|G|1721
9HY6|1|b|A|1722
9HY6|1|b|A|1723
9HY6|1|b|G|1724
*
9HY6|1|b|U|1736
9HY6|1|b|G|1737
9HY6|1|b|G|1738
9HY6|1|b|A|1739
9HY6|1|b|G|1740

Current chains

Chain b

23S rRNA

Nearby chains