IL_9HY6_070

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9HY6|1|b|A|1801, 9HY6|1|b|C|1816, 9HY6|1|b|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HY6_070 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1402

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9HY6|1|b|U|1798
9HY6|1|b|G|1799
9HY6|1|b|C|1800
9HY6|1|b|A|1801
9HY6|1|b|A|1802
9HY6|1|b|A|1803
9HY6|1|b|C|1804
*
9HY6|1|b|G|1813
9HY6|1|b|G|1814
9HY6|1|b|A|1815
9HY6|1|b|C|1816
9HY6|1|b|G|1817
9HY6|1|b|U|1818
9HY6|1|b|A|1819
9HY6|1|b|U|1820
9HY6|1|b|A|1821

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2