IL_9HY6_072

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9HY6|1|b|A|1899, 9HY6|1|b|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HY6_072 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.2354

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

9HY6|1|b|U|1841
9HY6|1|b|G|1842
*
9HY6|1|b|U|1898
9HY6|1|b|A|1899
9HY6|1|b|A|1900
9HY6|1|b|A|1901

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2