IL_9HYM_006
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HYM_006 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.1482
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9HYM|1|b|G|24
9HYM|1|b|U|25
9HYM|1|b|G|26
9HYM|1|b|G|27
9HYM|1|b|A|28
9HYM|1|b|U|29
9HYM|1|b|G|30
*
9HYM|1|b|C|510
9HYM|1|b|U|511
9HYM|1|b|G|512
9HYM|1|b|A|513
9HYM|1|b|A|514
9HYM|1|b|A|515
9HYM|1|b|C|516
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain q
- Large ribosomal subunit protein bL20
- Chain s
- Large ribosomal subunit protein uL22
- Chain z
- Gelation factor
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