IL_9HYM_010
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HYM_010 not in the Motif Atlas
- Homologous match to IL_7A0S_006
- Geometric discrepancy: 0.1078
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9HYM|1|b|G|188
9HYM|1|b|G|189
9HYM|1|b|A|190
9HYM|1|b|A|191
9HYM|1|b|C|192
9HYM|1|b|U|193
9HYM|1|b|G|194
*
9HYM|1|b|C|201
9HYM|1|b|U|202
9HYM|1|b|A|203
9HYM|1|b|A|204
9HYM|1|b|G|205
9HYM|1|b|U|206
9HYM|1|b|A|207
9HYM|1|b|C|208
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL28
- Chain l
- Large ribosomal subunit protein uL15
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