IL_9HYM_025
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9HYM|1|b|G|776, 9HYM|1|b|A|788, 9HYM|1|b|A|789, 9HYM|1|b|U|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HYM_025 not in the Motif Atlas
- Geometric match to IL_9E6Q_032
- Geometric discrepancy: 0.0861
- The information below is about IL_9E6Q_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9HYM|1|b|G|775
9HYM|1|b|G|776
9HYM|1|b|G|777
*
9HYM|1|b|C|787
9HYM|1|b|A|788
9HYM|1|b|A|789
9HYM|1|b|U|790
9HYM|1|b|C|791
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
- Chain s
- Large ribosomal subunit protein uL22
- Chain z
- Gelation factor
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