IL_9HYM_049

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HYM_049 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2185

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9HYM|1|b|C|1357
9HYM|1|b|G|1358
9HYM|1|b|A|1359
9HYM|1|b|G|1360
9HYM|1|b|G|1361
*
9HYM|1|b|C|1370
9HYM|1|b|G|1371
9HYM|1|b|U|1372
9HYM|1|b|A|1373
9HYM|1|b|G|1374

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2