IL_9HYM_091
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HYM_091 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1939
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9HYM|1|b|C|2466
9HYM|1|b|C|2467
9HYM|1|b|A|2468
9HYM|1|b|A|2469
9HYM|1|b|G|2470
*
9HYM|1|b|C|2480
9HYM|1|b|G|2481
9HYM|1|b|A|2482
9HYM|1|b|C|2483
9HYM|1|b|G|2484
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain m
- 50S ribosomal protein L16
- Chain v
- Transfer RNA; tRNA
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