IL_9HYM_098
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HYM_098 not in the Motif Atlas
- Homologous match to IL_7A0S_094
- Geometric discrepancy: 0.1714
- The information below is about IL_7A0S_094
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9HYM|1|b|C|2652
9HYM|1|b|U|2653
9HYM|1|b|A|2654
9HYM|1|b|G|2655
9HYM|1|b|U|2656
9HYM|1|b|A|2657
9HYM|1|b|C|2658
*
9HYM|1|b|G|2663
9HYM|1|b|G|2664
9HYM|1|b|A|2665
9HYM|1|b|C|2666
9HYM|1|b|C|2667
9HYM|1|b|G|2668
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: