IL_9I14_066

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

AUUA*U(PSU)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_066 not in the Motif Atlas

Homologous match to IL_9PN5_040

Geometric discrepancy: 0.0979

The information below is about IL_9PN5_040

Detailed Annotation

Tandem non-canonical cWW pairs; U in syn

Broad Annotation

Tandem non-canonical cWW pairs; U in syn

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9I14|1|L5|A|1746
9I14|1|L5|U|1747
9I14|1|L5|U|1748
9I14|1|L5|A|1749
*
9I14|1|L5|U|1781
9I14|1|L5|PSU|1782
9I14|1|L5|C|1783
9I14|1|L5|U|1784

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10