IL_9I14_113

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CCAAAUGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

9I14|1|L5|A|3785, 9I14|1|L5|C|3791, 9I14|1|L5|C|3810

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|C|3781
9I14|1|L5|C|3782
9I14|1|L5|A|3783
9I14|1|L5|A|3784
9I14|1|L5|A|3785
9I14|1|L5|U|3786
9I14|1|L5|G|3787
9I14|1|L5|C|3788
9I14|1|L5|C|3789
9I14|1|L5|U|3790
9I14|1|L5|C|3791
9I14|1|L5|OMG|3792
*
9I14|1|L5|C|3808
9I14|1|L5|G|3809
9I14|1|L5|C|3810
9I14|1|L5|G|3811

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA