IL_9I14_113
3D structure
- PDB id
- 9I14 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CCAAAUGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9I14|1|L5|A|3785, 9I14|1|L5|C|3791, 9I14|1|L5|C|3810
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I14_113 not in the Motif Atlas
- Homologous match to IL_9H3G_099
- Geometric discrepancy: 0.1068
- The information below is about IL_9H3G_099
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.4
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9I14|1|L5|C|3781
9I14|1|L5|C|3782
9I14|1|L5|A|3783
9I14|1|L5|A|3784
9I14|1|L5|A|3785
9I14|1|L5|U|3786
9I14|1|L5|G|3787
9I14|1|L5|C|3788
9I14|1|L5|C|3789
9I14|1|L5|U|3790
9I14|1|L5|C|3791
9I14|1|L5|OMG|3792
*
9I14|1|L5|C|3808
9I14|1|L5|G|3809
9I14|1|L5|C|3810
9I14|1|L5|G|3811
Current chains
- Chain L5
- LSU 28S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: