IL_9I14_141

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_141 not in the Motif Atlas

Homologous match to IL_8GLP_159

Geometric discrepancy: 0.0648

The information below is about IL_8GLP_159

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_34443.2

Basepair signature

cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9I14|1|L5|C|4596
9I14|1|L5|U|4597
9I14|1|L5|C|4598
9I14|1|L5|A|4599
9I14|1|L5|G|4600
9I14|1|L5|U|4601
9I14|1|L5|A|4602
9I14|1|L5|C|4603
*
9I14|1|L5|G|4608
9I14|1|L5|G|4609
9I14|1|L5|A|4610
9I14|1|L5|A|4611
9I14|1|L5|C|4612
9I14|1|L5|C|4613
9I14|1|L5|G|4614

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain LV

60S ribosomal protein L23

Chain Lm

Ubiquitin-60S ribosomal protein L40