IL_9I14_147
3D structure
- PDB id
- 9I14 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- GCGGAGC*GAACCU
- Length
- 13 nucleotides
- Bulged bases
- 9I14|1|L5|C|4741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I14_147 not in the Motif Atlas
- Geometric match to IL_9AXU_040
- Geometric discrepancy: 0.2875
- The information below is about IL_9AXU_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02020.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
9I14|1|L5|G|4740
9I14|1|L5|C|4741
9I14|1|L5|G|4742
9I14|1|L5|G|4743
9I14|1|L5|A|4744
9I14|1|L5|G|4745
9I14|1|L5|C|4746
*
9I14|1|L5|G|4954
9I14|1|L5|A|4955
9I14|1|L5|A|4956
9I14|1|L5|C|4957
9I14|1|L5|C|4958
9I14|1|L5|U|4959
Current chains
- Chain L5
- LSU 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: