IL_9I14_236
3D structure
- PDB id
- 9I14 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- ACUA*U(OMU)CU
- Length
- 8 nucleotides
- Bulged bases
- 9I14|1|S2|C|1403, 9I14|1|S2|U|1404
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I14_236 not in the Motif Atlas
- Homologous match to IL_9PN5_213
- Geometric discrepancy: 0.1807
- The information below is about IL_9PN5_213
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78800.5
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9I14|1|S2|A|1402
9I14|1|S2|C|1403
9I14|1|S2|U|1404
9I14|1|S2|A|1405
*
9I14|1|S2|U|1441
9I14|1|S2|OMU|1442
9I14|1|S2|C|1443
9I14|1|S2|U|1444
Current chains
- Chain S2
- SSU 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sg
- Receptor of activated protein C kinase 1
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