IL_9I1W_017

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUGAAAU*ACGGA(PSU)C

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|G|397
9I1W|1|1|U|398
9I1W|1|1|G|399
9I1W|1|1|A|400
9I1W|1|1|A|401
9I1W|1|1|A|402
9I1W|1|1|U|403
*
9I1W|1|4|A|13
9I1W|1|4|C|14
9I1W|1|4|G|15
9I1W|1|4|G|16
9I1W|1|4|A|17
9I1W|1|4|PSU|18
9I1W|1|4|C|19

Current chains

Chain 1

26S rRNA

Chain 4

5.8S RNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Le

60S ribosomal protein L32-like protein