IL_9I1W_039

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GACCUUC*GUAUC

Length

12 nucleotides

Bulged bases

9I1W|1|1|U|962, 9I1W|1|1|A|1086, 9I1W|1|1|U|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|G|958
9I1W|1|1|A|959
9I1W|1|1|C|960
9I1W|1|1|C|961
9I1W|1|1|U|962
9I1W|1|1|U|963
9I1W|1|1|C|964
*
9I1W|1|1|G|1084
9I1W|1|1|U|1085
9I1W|1|1|A|1086
9I1W|1|1|U|1087
9I1W|1|1|C|1088

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LQ

Ribosomal protein L18-like protein

Chain Lb

60S ribosomal protein L29