IL_9I1W_043

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCGAA(PSU)*AAAC

Length

10 nucleotides

Bulged bases

9I1W|1|1|G|983

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|G|981
9I1W|1|1|C|982
9I1W|1|1|G|983
9I1W|1|1|A|984
9I1W|1|1|A|985
9I1W|1|1|PSU|986
*
9I1W|1|1|A|1029
9I1W|1|1|A|1030
9I1W|1|1|A|1031
9I1W|1|1|C|1032

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LI

60S ribosomal protein L10-like protein

Chain LT

60S ribosomal protein l21-like protein