IL_9I1W_063

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGACGAAG*UCGAA

Length

13 nucleotides

Bulged bases

9I1W|1|1|C|1374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|U|1371
9I1W|1|1|G|1372
9I1W|1|1|A|1373
9I1W|1|1|C|1374
9I1W|1|1|G|1375
9I1W|1|1|A|1376
9I1W|1|1|A|1377
9I1W|1|1|G|1378
*
9I1W|1|1|U|1398
9I1W|1|1|C|1399
9I1W|1|1|G|1400
9I1W|1|1|A|1401
9I1W|1|1|A|1402

Current chains

Chain 1

26S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain LY

60S ribosomal protein L26-like protein

Chain Le

60S ribosomal protein L32-like protein