IL_9I1W_093

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9I1W|1|1|U|2122, 9I1W|1|1|U|2138, 9I1W|1|1|C|2142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|C|2119
9I1W|1|1|G|2120
9I1W|1|1|A|2121
9I1W|1|1|U|2122
9I1W|1|1|G|2123
9I1W|1|1|G|2124
*
9I1W|1|1|U|2136
9I1W|1|1|G|2137
9I1W|1|1|U|2138
9I1W|1|1|U|2139
9I1W|1|1|G|2140
9I1W|1|1|A|2141
9I1W|1|1|C|2142
9I1W|1|1|G|2143

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain Lp

60S ribosomal protein L43-like protein