IL_9I1W_099

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

9I1W|1|1|A2M|2244, 9I1W|1|1|C|2250, 9I1W|1|1|C|2269

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|C|2240
9I1W|1|1|5MC|2241
9I1W|1|1|A|2242
9I1W|1|1|A2M|2243
9I1W|1|1|A2M|2244
9I1W|1|1|U|2245
9I1W|1|1|G|2246
9I1W|1|1|C|2247
9I1W|1|1|C|2248
9I1W|1|1|U|2249
9I1W|1|1|C|2250
9I1W|1|1|OMG|2251
*
9I1W|1|1|C|2267
9I1W|1|1|G|2268
9I1W|1|1|C|2269
9I1W|1|1|G|2270

Current chains

Chain 1

26S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41-A