IL_9I1W_144

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

9I1W|1|3|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I1W_144 not in the Motif Atlas

Geometric match to IL_9AXU_125

Geometric discrepancy: 0.175

The information below is about IL_9AXU_125

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9I1W|1|3|C|15
9I1W|1|3|U|16
*
9I1W|1|3|A|63
9I1W|1|3|A|64
9I1W|1|3|G|65

Current chains

Chain 3

5S RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LI

60S ribosomal protein L10-like protein

Chain LJ

Putative ribosomal protein