IL_9I1W_145
3D structure
- PDB id
- 9I1W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GAAAACU*AUAGGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I1W_145 not in the Motif Atlas
- Geometric match to IL_8QYX_166
- Geometric discrepancy: 0.15
- The information below is about IL_8QYX_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.1
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9I1W|1|3|G|21
9I1W|1|3|A|22
9I1W|1|3|A|23
9I1W|1|3|A|24
9I1W|1|3|A|25
9I1W|1|3|C|26
9I1W|1|3|U|27
*
9I1W|1|3|A|53
9I1W|1|3|U|54
9I1W|1|3|A|55
9I1W|1|3|G|56
9I1W|1|3|G|57
9I1W|1|3|C|58
Current chains
- Chain 3
- 5S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
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