IL_9I2D_079

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9I2D|1|L5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I2D_079 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.109

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9I2D|1|L5|G|2001
9I2D|1|L5|A|2002
9I2D|1|L5|G|2003
9I2D|1|L5|U|2004
9I2D|1|L5|G|2005
*
9I2D|1|L5|C|2014
9I2D|1|L5|U|2015
9I2D|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11