IL_9I2D_085

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I2D_085 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0267

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9I2D|1|L5|G|2358
9I2D|1|L5|U|2359
9I2D|1|L5|A|2360
9I2D|1|L5|G|2361
9I2D|1|L5|U|2362
9I2D|1|L5|A|2363
9I2D|1|L5|G|2364
*
9I2D|1|L5|C|3858
9I2D|1|L5|G|3859
9I2D|1|L5|A|3860
9I2D|1|L5|A|3861
9I2D|1|L5|A|3862
9I2D|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CZ

nascent polypeptide 10aa ARF1-linker

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17