IL_9I2E_219

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I2E_219 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.1849

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9I2E|1|S2|G|874
9I2E|1|S2|A|875
9I2E|1|S2|C|876
*
9I2E|1|S2|G|910
9I2E|1|S2|C|911
9I2E|1|S2|C|912

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SH

40S ribosomal protein S7