IL_9I3L_002

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_002 not in the Motif Atlas

Geometric match to IL_8P9A_238

Geometric discrepancy: 0.3177

The information below is about IL_8P9A_238

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

9I3L|1|a|G|6
9I3L|1|a|G|7
9I3L|1|a|C|8
*
9I3L|1|a|G|112
9I3L|1|a|C|113

Current chains

Chain a

5S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein uL18