IL_9I3L_015

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_015 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0455

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9I3L|1|b|C|239
9I3L|1|b|C|240
9I3L|1|b|A|241
9I3L|1|b|G|242
9I3L|1|b|U|243
9I3L|1|b|A|244
9I3L|1|b|G|245
*
9I3L|1|b|C|253
9I3L|1|b|G|254
9I3L|1|b|A|255
9I3L|1|b|A|256
9I3L|1|b|C|257
9I3L|1|b|G|258

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain l

Large ribosomal subunit protein uL15