IL_9I3L_044

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_044 not in the Motif Atlas

Geometric match to IL_9AXU_094

Geometric discrepancy: 0.2174

The information below is about IL_9AXU_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9I3L|1|b|G|1040
9I3L|1|b|A|1041
9I3L|1|b|A|1042
9I3L|1|b|G|1043
*
9I3L|1|b|C|1116
9I3L|1|b|G|1117
9I3L|1|b|G|1118
9I3L|1|b|C|1119

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6

Chain m

50S ribosomal protein L16

Chain w

Large ribosomal subunit protein bL25