IL_9I3L_047

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9I3L|1|b|G|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_047 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1603

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9I3L|1|b|C|1198
9I3L|1|b|G|1199
9I3L|1|b|U|1200
*
9I3L|1|b|A|1249
9I3L|1|b|G|1250
9I3L|1|b|U|1251
9I3L|1|b|G|1252

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain l

Large ribosomal subunit protein uL15

Chain q

Large ribosomal subunit protein bL20