IL_9I3L_052

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9I3L|1|b|G|1334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_052 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2266

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9I3L|1|b|C|1321
9I3L|1|b|C|1322
9I3L|1|b|A|1323
9I3L|1|b|A|1324
9I3L|1|b|C|1325
*
9I3L|1|b|G|1333
9I3L|1|b|G|1334
9I3L|1|b|G|1335

Current chains

Chain b

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL22

Chain z

Gelation factor