IL_9I3L_053

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_053 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.1055

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9I3L|1|b|C|1353
9I3L|1|b|U|1354
9I3L|1|b|A|1355
9I3L|1|b|A|1356
9I3L|1|b|G|1357
*
9I3L|1|b|C|1378
9I3L|1|b|G|1379
9I3L|1|b|A|1380
9I3L|1|b|U|1381
9I3L|1|b|G|1382

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2