IL_9I3L_068

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_068 not in the Motif Atlas

Geometric match to IL_8B0X_180

Geometric discrepancy: 0.0579

The information below is about IL_8B0X_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9I3L|1|b|G|1668
9I3L|1|b|G|1669
9I3L|1|b|A|1670
9I3L|1|b|A|1671
9I3L|1|b|C|1672
9I3L|1|b|U|1673
9I3L|1|b|A|1674
9I3L|1|b|G|1675
9I3L|1|b|G|1676
*
9I3L|1|b|C|1994
9I3L|1|b|U|1995
9I3L|1|b|G|1996
9I3L|1|b|U|1997
9I3L|1|b|C|1998

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

Large ribosomal subunit protein uL14